ASSIsT 1.02 – Automated SNP Scoring Tool

ASSIsT  1.02

:: DESCRIPTION

ASSIsT is a tool for the efficient filtering of Illumina Infinium/BeadExpress based SNP markers.

::DEVELOPER

the Computational Biology Center for the community of researchers at FEM

:: SCREENSHOTS

ASSIsT

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 ASSIsT

:: MORE INFORMATION

Citation:

ASSIsT: An Automatic SNP ScorIng Tool for in- and outbreeding species.
Di Guardo M, Micheletti D, Bianco L, Koehorst-van Putten HJ, Longhi S, Costa F, Aranzana MJ, Velasco R, Arús P, Troggio M, van de Weg EW.
Bioinformatics. 2015 Aug 6. pii: btv446

ASSIST v1- Active Site Similarity Search Tool

ASSIST v1

:: DESCRIPTION

ASSIST is an application for the detection of catalytic sites in unknown function proteins.

::DEVELOPER

the Theoretical Biology and Bioinformatics Laboratory

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Windows/Linux
  • JRE

:: DOWNLOAD

  ASSIST

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 1;30(7):1022-4. doi: 10.1093/bioinformatics/btt664. Epub 2013 Nov 15.
ASSIST: a fast versatile local structural comparison tool.
Caprari S, Toti D, Viet Hung L, Di Stefano M, Polticelli F.

ColonyCount BETA – Assist Counting Bacterial Colonies on Agar Plates

ColonyCount BETA

:: DESCRIPTION

ColonyCount is a smartphone app that can assist when counting bacterial colonies on agar plates. Counting is done by taking a picture of plate and placing tags on colonies by tapping screen. ColonyCount will continuously attempt to automatically count remaining colonies using data from the manually placed tags. Region of interest can be defined by crop primitives and free-drawing exclusion areas. Besides counting the app can also be used to perform different measurements using line and sphere primitives.

::DEVELOPER

Toolbox Factory

:: SCREENSHOTS

ColonyCount

:: REQUIREMENTS

  • Android

:: DOWNLOAD

  ColonyCount

:: MORE INFORMATION

REtools 5.0-101 – Assist in Restriction Enzyme Use

REtools 5.0-101

:: DESCRIPTION

REtools is a user friendly and easily customized program to organize any laboratory enzyme stock, brings a software solution that makes restriction enzyme use and reaction condition determination straightforward and efficient.

The usually unexplored potential of isoschizomers becomes accessible to all, since REtools proposes all possible enzymes similar to the one(s) chosen by the user. Finally, many of the commonly overlooked subtleties of restriction enzyme work, such as methylation requirement, unusual reaction conditions, as well as the number of flanking bases required for cleavage, are automatically provided by REtools.

::DEVELOPER

P. Pognonec

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac OsX

:: DOWNLOAD

REtools for Win ; for Mac ; Manual

:: MORE INFORMATION

Citation:

REtools: A laboratory program for restriction enzyme work: enzyme selection and reaction condition assistance. BMC Bioinformatics 2006 Feb; 7:98

Any comment and/or proposal concerning this application is welcome! Please contact P. Pognonec for additional information.