MANOR 1.40.0 – Micro-Array NORmalization of array-CGH data

MANOR 1.40.0

:: DESCRIPTION

MANOR (Micro-Array NORmalization) is a software which is devoted to the normalization of Array Comparative Genomic Hybridization (array-CGH) data.

::DEVELOPER

U900 Institut Curie – INSERM/Mines ParisTech “Bioinformatics and Computational Systems Biology of Cancer

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • R package
  • Bioconductor

:: DOWNLOAD

 MANOR

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2006 May 22;7:264.
Spatial normalization of array-CGH data.
Neuvial P, Hupé P, Brito I, Liva S, Manié E, Brennetot C, Radvanyi F, Aurias A, Barillot E.

snapCGH 1.38.0 – Segmentation, Normalisation And Processing of Array CGH data

snapCGH 1.38.0

:: DESCRIPTION

snapCGH is a softwaer for the analysis of array CGH data. It has been written to be compatible with limma so that the user can apply all of the preprocessing functions available within limma to array CGH data.

::DEVELOPER

Computational Biology Group, Department of Oncology, University of Cambridge

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 snapCGH

:: MORE INFORMATION

MSMAD 1.0 – Median Smoothing Median Absolute Deviation for Breakpoint Detection in Array CGH data

MSMAD 1.0

:: DESCRIPTION

MSMAD is a computationally efficient method for the analysis of noisy array CGH data.

::DEVELOPER

Bioinformatics in Translational Research Group

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R

:: DOWNLOAD

 MSMAD

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Mar 15;25(6):703-13. doi: 10.1093/bioinformatics/btp022. Epub 2009 Jan 15.
MSMAD: a computationally efficient method for the analysis of noisy array CGH data.
Budinska E1, Gelnarova E, Schimek MG.

waviCGH – Server Application for the Analysis and Visualization of Array-CGH data

waviCGH

:: DESCRIPTION

waviCGH is a versatile web-server application for the analysis and visualization of array-CGH data. With waviCGH you can upload and process Log Ratios or Copy Numbers.waviCGH includes methods for pre-processing of the data, segmentation, calling of gains and losses, and minimal common regions determination over a set of experiments.

::DEVELOPER

 Bioinfo Unit@CNIO

:: SCREENSHOTS

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

   No, Only Web Service

:: MORE INFORMATION

Citation

Angel Carro; Daniel Rico; Oscar M. Rueda; Ramon Diaz-Uriarte; David G. Pisano.
waviCGH: a web application for the analysis and visualization of genomic copy number alterations.
Nucleic Acids Research 2010; doi: 10.1093/nar/gkq441