Anchor 0.3.1 – Post-processing Tools for de novo Assemblies

Anchor 0.3.1

:: DESCRIPTION

Anchor is a set of tools for making automated improvements to de novo assemblies.

Anchor currently includes two main modules:

– Correction of erroneous single-nucleotide variants and small indels
– Scaffold-filling by local re-assembly

::DEVELOPER

Rod Docking

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Anchor

:: MORE INFORMATION

Murasaki 1.68.6 – Find Anchors from Multiple Genomes

Murasaki 1.68.6

:: DESCRIPTION

Murasaki provides an open source platform to take advantage of long patterns, cluster computing, and novel hash algorithms to produce accurate anchors across multiple genomes with computational efficiency significantly greater than existing methods.

::DEVELOPER

Sakakibara Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Murasaki

:: MORE INFORMATION

Citation:

Kris Popendorf, Hachiya Tsuyoshi, Yasunori Osana, Yasubumi Sakakibara
Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes
PLoS ONE 5(9): e12651.

Anchor – Predict Binding Regions in Proteins

Anchor

:: DESCRIPTION

ANCHOR aims to predict binding regions in proteins that are disordered in isolation but can undergo a disorder-to-order transition upon binding to a structured protein partner.  The approach is based on the energy estimation method and it uses a single amino acid sequence as an input.

DEVELOPER

Institute of Enzymology,the Biological Research Center of the Hungarian Academy of Sciences.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Anchor

:: MORE INFORMATION

Citation:

Zsuzsanna Dosztányi, Bálint Mészáros and István Simon (2009)
ANCHOR: web server for predicting protein binding regions in disordered proteins
Bioinformatics 25(20): 2745-2746.