Analyze
- GEM library PR3 – Index/Analyze Huge Genomes
- YANAsquare 201212 / YANAvergence – Integrated Network Reconstruction, Visualization and Analysis
- FragmentationAnalyzer 1.5.9 – Analyze MS/MS Fragmentation Data
- VitaPad 0.6.1c – Visualize and Analyze Biological Pathways
- LabKey Server 12.3 – Organize, Analyze, and Share Biomedical Research data
- Bersoft Image Measurement 8.16 – Acquire, Measure, and Analyze Digital Images
- gFeatMiner 1.5.0 – Analyze and Manipulate Genomic Data
- FlowAnd 1.0 – Analyze Largescale, Multi-color Flow Cytometry data
- imago 1.0 Beta 4 – Store, Organize, Search, and Analyze Scientific Images
- PCS 1.5 – Identify and Analyze Conserved K-mers in Pairwise Alignment
- BALM 20101031 – Analyze MBD-seq
- Visual Gene Developer 1.3 Build 737 – Gene Design software to Analyze, Design, and Optimize Genes
- chromEvol 1.3 – Analyze Changes in Chromosome-number along a Phylogeny
- FPCBrowser 1.5 – Analyze Clone Pooling data
- Swiss-PdbViewer 4.1 – Analyze Several Proteins 3D Structure at the Same Time
- vtools 1.0.3a – Annotate, Summarize and Analyze Next-gen Sequencing Variation data
- Trans-ABySS 1.4.4 – Analyze ABySS multi-k-assembled Shotgun Transcriptome Data.
- DisGeNET 2.0 – Query and Analyze a Network representation of human Gene-disease databases
- PhylochipAnalyzer 1.0 – Analyse Hierarchical Probe sets
- Epi-Speller – Analyze Multiple Genome-wide Profiling Epigenomic data
- QPCR 1.0 – Store, Manage, and Analyze data from qPCR Experiments
- JNets 1.0 – Visualise, Manipulate and Analyze Networks by Overlaying Annotation
- ChromatoGate 1.2 – Analyze / Edit Chromatogram data
- AffyExtensions 0.8-2 – Analyze Affymetrix data
- STAMP 2.0.0 – Analyze Metagenomic Profiles
- TAMO 20120321 – Analyze Transcriptional Regulation using DNA-sequence Motifs
- TWOLOC – Analyze Two-locus Susceptibility Gene Models in affected Sib-pair data
- DE-SAGE – Analyze SAGE Library data
- Gemma 1.5 – Analyze Genomics data using Meta-analysis
- SNPbrowser 4.0 – Analyze and Visualize the Immense SNP Datasets
- HTSeq 0.5.3 – Process and Analyze data from High-throughput Sequencing (HTS) Assays
- SNPNB 1.0 – Analyze Single Nucleotides Polymorphism NeighBoring Compositions
- RSEQtools 0.6 – Analyze RNA-Seq data using Compact and Anonymized data summaries
- RESTSITE 1.2 – Analyze Restriction Site or Fragment Data
- AQUA 3.2 – Analyze the QUAlity of Biomolecular Structures
- GERP++ 20110522 – Analyze Evolutionary Rates and Find Constrained Elements in a Multiple Alignment
- RNApathfinder – Analyze Near-optimal Folding Pathways between RNA Secondary Structures
- ArrayFun 1.0 – Analyze 2-color Expression Arrays
- CGHweb 1.0 – Analyze Array_CGH data with Multiple Algorithms
- eHAP 2.0 – Analyze Multilocus data as Haplotypes
- AUTOSCAN 1.0.3 – Easy Genome-wide Scans with Analyze
- DR_SEQAN 1.5 – Analyze RT and PR Sequences
- qPCR-DAMS 1.2 – Analyze, Manage, and Store Quantitative Real-Time PCR data.
- GenEx 5.3.6 – Analyze Real-time qPCR Data
- Parasight 7.6 – Visualize and Analyze Biological Pairwise Alignments
- BioSeqAnalyzer 1.0 – Analyze DNA and Protein Sequences
- CMEIAS Color Segmentation 1.0 – Segment & Analyze Foreground Objects within Complex Images
- TreeViewJ 1.1.2 – View & Analyze Phylogenetic Trees
- Analyze – Collection of Linkage & Assosiation software


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