MetaComp – Metagenomic Comparative Analysis Platform

MetaComp

:: DESCRIPTION

 MetaComp is a comparative analysis platform for metagenomic data, which contains multiple tools for

::DEVELOPER

ZhuLab, Peking Uiniversity, Beijing

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows
  • R

:: DOWNLOAD

 MetaComp

:: MORE INFORMATION

KNIME 3.1.2 – open-source data Analysis Platform for Next-generation Sequencing data analysis

KNIME 3.1.2

:: DESCRIPTION

KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis, and exploration platform. It has recently been updated with new functionality and workflows that open the door to performing next generation sequencing analysis using the KNIME framework.

::DEVELOPER

(bernd.jagla@pasteur.fr) Departement Génomes et Génétique, Institut Pasteur

:: SCREENSHOTS

KNIME

:: REQUIREMENTS

  • Linux/ Windows/MacOsX

:: DOWNLOAD

 KNIMEExtending KNIME

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Oct 15;27(20):2907-9. doi: 10.1093/bioinformatics/btr478. Epub 2011 Aug 27.
Extending KNIME for next-generation sequencing data analysis.
Jagla B, Wiswedel B, Coppée JY.

PINA 2.0 – Protein Interaction Network Analysis platform

PINA 2.0

:: DESCRIPTION

PINA is an integrated platform for protein-protein interaction network construction, filtering, analysis, visualization and management.

::DEVELOPER

Hautaniemi Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Cowley, M.J., Pinese, M., Kassahn, K.S., Waddell, N., Pearson, J.V., Grimmond, S.M., Biankin, A.V., Hautaniemi, S. and Wu, J. (2012)
PINA v2.0: mining interactome modules.
Nucleic Acids Res, 40, D862-865.

PALMsiever 20140904 – Visualization and Analysis Platform for Single-molecule Localization Microscopy

PALMsiever 20140904

:: DESCRIPTION

The PALMsiever platform has been designed for the visualization and analysis of single-molecule localization microscopy data. It includes interactive browsing, filtering and analysis, plus the ability to extend its functionality through plugins.

::DEVELOPER

Thomas Pengo

:: SCREENSHOTS

PALMsiever

::REQUIREMENTS

  • Linux / Windows/ MacOsX
  • MATLAB
  • DipImage

:: DOWNLOAD

 PALMsiever

:: MORE INFORMATION

Citation

PALMsiever: a tool to turn raw data into results for single-molecule localization microscopy.
Pengo T, Holden SJ, Manley S.
Bioinformatics. 2014 Oct 31. pii: btu720.

GECKO 20050621 – Large-scale Gene Expression Analysis Platform

GECKO 20050621

:: DESCRIPTION

Gecko (Gene Expression: Computation and Knowledge Organization) is a complete, high-capacity centralized gene expression analysis system, developed in response to the needs of a distributed user community.

::DEVELOPER

GECKO team

:: SCREENSHOTS

GECKO1

:: REQUIREMENTS

  • WIndows/ linux
  • Apach
  • Java
  • Perl
  • C++ Compiler

:: DOWNLOAD

 GECKO

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2004 Dec 10;5:195.
GECKO: a complete large-scale gene expression analysis platform.
Theilhaber J, Ulyanov A, Malanthara A, Cole J, Xu D, Nahf R, Heuer M, Brockel C, Bushnell S.