Analysis
- MolQuest 2.4.3 – Bioinformatics Toolbox for Analysis of Biomedical Data
- BIC-seq 2.1.1 – Copy Number analysis from Whole-genome Sequencing data
- PathwayAnalyser 1.0 – Analysis of Metabolic Pathways
- GenePattern 3.5- Genomic Analysis Platform
- EBSeq 1.1.6 – RNA-Seq Differential Expression Analysis
- Savant 2.0.3 – Sequence Annotation Visualization & Analysis Tool
- hapLOH 1.2 – Analysis of loss of Heterozygosity in Tumor Genomes
- DynaFit 4.05.063 – Enzyme Kinetic Data Analysis
- CLC Genomics Workbench 6.0.3 – Assembly & Analysis of Sequencing Data
- CummeRbund 2.0.0 – Exploration, Analysis and Visualization of Cufflinks high-throughput RNA-Seq data
- MuSi – Analysis of Gene Libraries Generated by Dodon-directed Mutagenesis
- sLDA – Sparse Linear Discriminant Analysis
- MEGA 5.2 – Molecular Evolutionary Genetics Analysis
- Gitools 1.8.4 – Analysis and Visualization of Genomic Data Using Interactive Heat-Maps
- ProDy 1.4.2 – Python package for Analysis and Modeling of Protein Structural Dynamics
- DNA Baser 3.5.4 – DNA Sequence Assembly & Analysis
- CMView 1.1.1 – Protein Contact Map Visualization and Analysis
- Kraken 13-100 – Tools for Quality Control and Analysis of High-throughput Sequence data
- FMA 0901 – Protein Functional Mode Analysis
- BioLayout Express3D 3.0RC6- Biological Network Visualisation and Analysis
- ARTO – Analysis of Replication Timing and Organization
- miTEA – miRNA Target Enrichment Analysis
- CIMS 1.0.0 – Crosslinking Induced Mutation Site analysis
- Circles 0.1.1 – Analysis of RNA Secondary Structure
- BioAnalyzer 2100 – Analysis of BioAnalyzer data
- ANTHEPROT 6.3.1 – Protein Sequence Analysis
- APE 3.0-8 – Analysis of Phylogenetics and Evolution
- Peditree 2005 – Plant Pedigree Tree Drawing & Analysis
- GGT 2.0 – Visualization & Analysis of Molecular Marker Data
- Cross Checker 2.91 – Genetic Fingerprint Gel Image Analysis
- LinRegPCR 2013.03.28 – Analysis of Quantitative PCR Data
- jPCR 1.15.8 – Java Tools for PCR, in silico PCR, Oligonucleotide Assembly & Analysis
- TASE 1.5.1 – Tag-counting and Analysis of Solexa Experiments
- MAPT 0.58 – Pathway Annotation, Analysis
- OSIRIS 2.1 – Analysis of Multiplex DNA Profiles
- WellReader 3.0 – Analysis of Fluorescence and Luminescence Reporter Gene data
- BioGranat 0.1 – Molecular Biology Graph Visualisation and Analysis Tool
- GelQuest 3.1.7 – Analysis of DNA Fingerprints
- Peanut v1 – Protein Expression ANalysis Unified Tool
- engene – Gene-Expression Data Processing and Exploratory Data Analysis
- ASTRO – Analysis of Short Time-series using Rank Order preservation
- mirConnX – Analysis of mRNA and microRNA (miRNA) Gene Regulatory Networks
- Genetrix 3.62 – Analysis of Microarray Data
- AltAnalyze 2.0.8 – Microarry and RNA-Seq Analysis
- siliColony – Modifier Gene Analysis
- CRAVAT 1.0 – Cancer-related Analysis of Variants Toolkit
- PhenoCapture 1.4 Build 584 – Scientific Image Capture and Analysis software
- BioImageXD 1.0 r1799 – Analysis & Visualization of Multidimensional Biomedical Images
- analysis 0.8.3 – Evolutionary Genetic Analysis
- SilVA 1.0.1 – Silent Variant Analysis using random Forests
- Anduril 1.2.15 – ANalysis of Data Using Rapid Integration of aLgorithms
- Oligo 7.57 – Primer Analysis Software
- Atlas2 1.4.3 / Atlas2Cloud 0.5 – Genome Analysis Suite
- SeqMonk 0.24.0 – Visualisation and Analysis of Mapped Sequence Data
- GenomeTools 1.5.0 – Genome Analysis Software
- VisIt 2.6.1 – Visualization and Analysis tool for Viewing Scientific Data
- MassXpert 3.4.0 – Polymer Chemistry Modelling & Simulation/Analysis of Mass Spectrometric Data
- LTSOFT 1.3 – Analysis of Case-control Association Studies with known Risk Variants
- GCTA 1.04 – Genome-wide Complex Trait Analysis
- Tav4SB 0.2.2 – Web service operations for analysis of the Kinetic models of Biological Systems
- Sirius PSB 2.3.3 – Generic System for Analysis of Biological Sequences
- HCA-Vision 2.1.6 – Analysis of Cell Images
- GenAlEx 6.5 beta5 – Population Genetic Analysis within Microsoft Excel
- SoDA / SoDA2 – Somatic Diversification Analysis
- Exome Power Calculator – Analysis of Exome Sequencing
- EXPANDER 6.06 – Gene Expression Analysis & Visualization
- GWIS 0.1 – Multivariate GWAS analysis
- JOY 5.0 – Protein Sequence-Structure Representation and Analysis
- MIPAV 6.0.1 – Medical Image Processing, Analysis, and Visualization
- inGAP 2.8.2 – Integrated Next-gen Genome Analysis Platform
- MEGAN 4.70.4 – Metagenome analysis
- CellTrack – Cell Tracking and Motility Analysis
- Qeseq 0.2.2 – multipurpose ChIP-seq Analysis tool
- TracePilot 1.0 – Analysis of Phenotypes related to Cell Motility
- Gene Construction Kit 4.0.1 – Plasmid Mapping, DNA Cloning Analysis, Vector Manipulation
- Bioinformatics Analysis Scripts
- W-curve – Visualization and Analysis of long Genomic Strings
- SNP tools 1.80 – Analysis and Conversion of Genotype data
- CLEAN 1.2.9 – CLustering Enrichment ANalysis
- BRB-ArrayTools 4.3.0 Beta2 – Visualization & Analysis of DNA Microarray Gene Expression Data
- Rahnuma 1.1.1 – Prediction and Analysis of Metabolic Pathways and Comparison of Metabolic Networks
- Sequencher 5.1 – DNA Sequence Assembly and Analysis
- Genometa 0.51 – Rapid Analysis of Metagenomic Datasets
- MicroarrayRUS 1.0 – Analysis of Microarray data
- TRAP 1.1 – Tandem Repeats Analysis Program
- WinSAAM 3.0 – The Simulation, Analysis and Modeling Software
- RegAnalyst – Analysis of Regulatory Motifs, Networks and Pathways
- PSAweb – Analysis of Protein Sequence and Multiple Alignment
- i-GSEA4GWAS 1.1 – Improved-Gene Set Enrichment Analysis for Genome-Wide Association Study
- TFCoEvolve – Transcription Factor CoEvolution Analysis
- cnvHMM 1.0.1 – Copy Number Analysis using Hidden Markov algorithm
- TINGe 1.061 / GeNA 0.1 – Gene Networks Inference and Analysis
- miRNAkey 1.2 – Analysis of microRNA Deep Sequencing data
- GiA Roots – Analysis of Plant Root system Architecture
- R-SAP 1.1 – RNA-Seq Analysis pipeline
- SCA – Sequence Composition Analysis
- GDL 1.1.0 – Genetic Data analysis Library
- Vaa3D 2.801 – Bioimage Visualization & Analysis
- fs_kit 0.1 – Analysis of Force Spectra
- MetaGeneAlyse – Analysis of Gene Expression and Metabolite data
- GeneCAT – Gene Co-expression Analysis Tool-box
- FFCA 1.01 – Feasibility-based Flux Coupling Analysis of Metabolic Networks
- ProbeMaker 1.4.1 – Design and Analysis of sets of Oligonucleotide Probes
- Delila-Genome 1.0 – Analysis of Protein Binding Sites in complete Genome Sequences
- dChip 2011.12 – Analysis & Visualization of Gene Expression & SNP Microarrays
- MBRole – Enrichment Analysis of Metabolomic data
- cell-motility 2.0 – Analysis of Cell Motility Paths over time
- POSTMan 2.0a – POST-translational Modification analysis
- WEBnm@ 2.0 – Computation and analysis of Low-frequency Normal Modes for Proteins
- mBlosum – Webtool for Mutagenesis Target Analysis
- G2D 5.0 – Analysis of candidate Genes for mapped inherited Human Diseases
- GENOVA 1.00 – Genome Visualization and Analysis software for detailed Comparison of Genome Functions
- VANTED 2.1.0 – Visualization and Analysis of Networks containing Experimental Data
- PhyDesign – Phylogenetic Informativeness Analysis
- RINalyzer 1.3 – Cytoscape plugin of Visualization and Analysis of Biomolecular Networks
- CAPS 1.0 – Coevolution Analysis using Protein Sequences
- SWAPSC 1.0 – Sliding Windows Analysis Procedure to detect Selective Constraints in Protein-coding Genes
- ChemChains 1.22 – Simulation & Analysis of Logical Models
- Uncoupler – Analysis of Coupled Folding and Binding
- CooperativeDimer – Analysis of Ligand Binding to Dimers
- ProACT 2 – Analysis of Protein Accessibilities, Cavities and Contacts
- BNA 20060216 – Biological Network Analysis
- FlexServ – Analysis of Protein Flexibility
- Pyicos 1.1b – Analysis of High-throughput Sequencing data
- PIANA 1.47 – Protein Interactions And Network Analysis tool
- BIANA 1.2.6.1 – Biologic Interaction and Network Analysis
- SEA – Serial Expression Analysis
- RnBeads 0.99 – Comprehensive DNA Methylation Analysis
- BiQ Analyzer HT – Analysis of High-throughput Bisulfite Amplicon Sequencing data
- BiQ Analyzer 3.0 – Tool for DNA Methylation Analysis
- EpiExplorer – Exploration and Analysis of large Epigenomic Datasets
- CNViewer 2.1 – Analysis and Comparison of Copy Number Variation (CNV)
- ACD 1.0 – Analysis of the Results of Whole Genome Scans
- waviCGH – Server Application for the Analysis and Visualization of Array-CGH data
- Asterias – Applications for the Analysis of Gene Expression and aCGH data
- GenePath – Analysis of Genetic Data and Discovery of Genetic Networks
- dictyExpress 1.5 – Dictyostelium Gene Expression Analysis
- CAPweb 2.4 – Web based platform for CGH-array Management and Analysis
- BicAT 2.22 – Biclustering Analysis Toolbox
- NUCGEN – Generation and Analysis of Sequence Dependent Nucleic Acid Structures
- NUPARM – Analysis of Sequence Dependent Variations in Nucleic Acid Double Helices
- ALTREE 1.2.1 – Phylogeny-based Analysis
- HTqPCR 1.13.0 – Analysis of High-throughput Quantitative Real-time PCR data
- Frida 1.1.0 – FRamework for Image Dataset Analysis
- MSBE 1.0.5 – Analysis of Gene Expression data using a new bi-clustering method
- COPS Benchmark 2009/6 – Interactive Analysis of Database Search Methods
- Segminator II 0.1.1 – Analysis of viral data generated using the 454 Life Sciences Sequencing Platform
- pcca – Phylogenetic Canonical Correlation Analysis
- GenePro 2.5.2 – Visualization and Analysis of Protein and Gene Interaction Networks
- MASiVE 20111018 – Mapping and Analysis of SIreVirus Elements
- GenSSI v130511 – Structural Identifiability Analysis of Biological Models
- WebArray 1.4 – Web platform for analysis of Microarray data
- INCA 2.1 – INteractive Codon usage Analysis
- Prometheus 0.8.0 – Storage, Management, and Analysis of Fermentation data
- SAM 4.0 – Significance Analysis of Microarrays
- DAMBE 5.3.00 – Sequence Data Analysis in Molecular Biology and Evolution
- iLAP 1.3.3 – Laboratory Data Management, Analysis and Protocol Development
- Huygens 4.2 – 3D Huygens Deconvolution & Analysis Software
- ImageTool 3.0 – Image Processing and Analysis Program
- PASA 20120625 – Gene Structure Annotation & Analysis
- SEWAL 20100804 – Next Generation DNA Sequencing Analysis and Visualization
- J-Express 2012 – Analysis and Visualization of Microarray Data
- WebLab 1.2 – Multifunctional Bioinformatics Analysis Platform
- BiasViz 2 – Protein Amino Acid Bias Analysis Applet
- ESPRIT-Tree – Hierarchical Clustering Analysis of Massive Sequence data
- Crux 1.38 – Tandem Mass Spectrometry Analysis
- RAMMCAP 20091106 – Rapid Analysis of Multiple Metagenomes with a Clustering and Annotation Pipeline
- IBD2.R – An R script to perform IBD=2 Analysis in Exome data
- Ontologizer 2.1 – Analysis and Visualization of High-Throughput Biological Data Using Gene Ontology
- SeqExpress 1.3.2 – Analysis and Desktop Visualisation program for Gene Expression Experiments
- CopyCat 2.02 – Co-phylogenetic Analysis Tool
- SNPTrack 1.1.0 – SNP & GWAS Data Management, Analysis and Interpretation
- Decision Forest 2 – Novel Pattern Recognition method for multiclass Classification in Microarray data analysis
- JMATING 1.0.8 – Analysis of Sexual Selection and Sexual Isolation Effects from Mating Frequency data
- ANAT 20111212 – Inference and Analysis of Functional Networks of Proteins
- IBRENA 1.0 – In silico Biochemical Reaction Network Analysis
- PhosPatch – Phosphorylation Site Patch Analysis
- CTree 1.03 – Analysis of Clusters on Phylogenetic Trees
- spaa 0.2.0 – Species Association Analysis
- Phylocom 4.2 – Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic
- MetMap 2.0 – Analysis of Methyl-Seq Experiments
- exploRase 1.4.0 – Exploratory Multivariate analysis of Systems Biology data
- Cyber-T – Software and Server for Analysis of DNA Microarray data
- TFBS 0.5.0 – Perl modules for Transcription Factor Binding Site Detection and Analysis
- RUM 1.11 – Comparative Analysis of RNA-Seq Alignment Algorithms and the RNA-Seq Unified Mapper
- Spot 3.2 – Analysis of Microarray Images
- PointCloudXplore 2.0 – Visualization and analysis of the data in PointCloud and Virtual Embryo Files
- LigAlign 1.0 – Ligand-based Active site Alignment and Analysis
- MAVisto 2.7.0 – Motif Analysis and VISualisation TOolkit
- FAMD 1.25 – Dominant Fingerprint Data Handling and Analysis
- SynTReN 1.2 – Generator of Synthetic Gene Expression data for Design and Analysis of Structure Learning algorithms
- SNPLINK – Multipoint Linkage analysis of Densely Distributed SNP data
- SNPALYZE 8.0 – SNP and Disease Association Analysis Software
- SNAP Workbench 2.0 – Analysis programs for making Inferences on Population processes
- CoTrix 3.0 – Analysis of complex DNA Banding Patterns
- SGS 1.0d – Analysis of Spatial Genetic and Phenotypic Structures of Individuals and Population
- SASQuant 1.3 – Analysis of Quantitative Genetic Data
- mtDIS – Mitochondrial DNA Distance analysis program
- Tomcat 1.0 – Haplotype Sharing Analysis using Mantel Statistics
- MCMC++ 1.2 – C++ class library for Monte Carlo Markov Chain Analysis of Bayesian models
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