Algorithm
- MeDiChI 0.4.0 – Model-Based ChIP-chip Deconvolution Algorithm
- reHCstar 2.0.0 – Algorithm for Haplotype Inference problem on Pedigree data with Recombinations, Errors and Mutations
- optiCall 0.6.4 – Robust Genotype-calling Algorithm
- GeneStitch 1.1 – Network Matching Algorithm to Gene Assembly
- Illuminus – Genotype Calling algorithm
- ADDA version 4 – Automatic Domain Decomposition Algorithm
- MIDIA 1.1 – Modularization Identification by Dynamic Independence Algorithms
- CHIAMANTE 1.0.0 – Joint Genotype Calling algorithm for Array and Sequence data
- LIS alignment – Parse BLAST output using the LIS (Longest Increasing Subsequence) algorithm
- ProPhylo 1.02 – Phylogenetic Profile comparison program using Partial Phylogenetic Profile algorithm
- NRProF – Protein Function Prediction Based on the Neural Response Algorithm
- urms – Structure Comparison Algorithm
- prof_sim – Profile-profile Comparison Algorithm
- BOQA – Bayesian Ontology Query Algorithm
- SARA 1.0 – Side-chain Angular Replacement Algorithm
- SIB-BLAST – Algorithm to Improve Accuracy in PSI-BLAST Searches
- OrthoMCL 2.0.3 – Genome-scale Algorithm for Grouping Orthologous Protein Sequences
- PTMClust 1.1 – A Post-translational Modification Refinement Algorithm
- ISA 1.0.0 – Iterative Signature Algorithm
- Pathway – Heritable Clustering Algorithms
- ABACAS 1.3.1 – Algorithm Based Automatic Contiguation of Assembled Sequences
- Kinwalker – Algorithm for Prediction of RNA Folding Trajectories
- CHIAMO 0.2.1 – Genotype Calling Algorithm for Multi-cohort Study
- CompareProspector – Sequence Motif Finding Algorithm
- NeoBio 1.0 pre-alpha – Sequence alignment algorithms in Java
- LaJolla 2.1 – Peer Reviewed Algorithm for the 3D Alignment
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