Aflpdiv 1.1 – Compute Comparable Measures of Diversity from AFLP Data

Aflpdiv 1.1

:: DESCRIPTION

Aflpdiv computes comparable measures of diversity (allelic richness and % polymorphic loci) from AFLP data.

::DEVELOPER

Rémy Petit (Petit@pierroton.inra.fr), INRA-Bordeaux

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Aflpdiv

:: MORE INFORMATION

Citation

Coart E, Van Glabeke S, Petit RJ, Van Bockstaele E, Roldan-Ruiz I:
Range wide versus local patterns of genetic diversity in hornbeam (Carpinus betulus L.).
Conservation Genetics 2005, 6:259-273

ISIF 1.1.3 – Performs in silico AFLP

ISIF 1.1.3

:: DESCRIPTION

ISIF (In SIlico Fingerprinting) is a free user-friendly software that performs in silico AFLP (can also be applied for DART or RAD).

::DEVELOPER

Laboratoire d’Ecologie Alpine

:: SCREENSHOTS

ISIF

:: REQUIREMENTS

  • Windows with .net 2.0 

:: DOWNLOAD

 ISIF

:: MORE INFORMATION

Citation

Paris, M., Bonnes, B., Ficetola, G.F., Poncet, B.N., Despres, L. (2010)
Amplified fragment length homoplasy: in silico analysis for model and non-model species.
BMC Genomics 11:287.

NucDivAFLP – Estimating Nucleotide Diversity from AFLP data

NucDivAFLP

:: DESCRIPTION

NucDivAFLP is a program to estimate nucleotide diversity from AFLP data

::DEVELOPER

the INNAN Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX
  • C Compiler

:: DOWNLOAD

 NucDivAFLP

:: MORE INFORMATION

Citation

A method for estimating nucleotide diversity from AFLP data.
Innan H, Terauchi R, Kahl G, Tajima F.
Genetics. 1999 Mar;151(3):1157-64.

AFLPinSilico v2 – Simulating AFLP Fingerprints

AFLPinSilico v2

:: DESCRIPTION

AFLPinSilico performs AFLP simulations with different combinations of restriction enzymes or selective nucleotides, on organisms or data sets for which DNA sequences are available. It allows identification of the fragments and the genes they are tagging, sparing the collection and sequencing task. Besides data analysis, such simulations can be used by experimentalists to efficiently plan and design AFLP based experiments, saving time and expensive trials.

AFLPinSilico Online Version

::DEVELOPER

Stephane Rombauts @ VIB / UGent

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux/ Windows/MacOsX
  • Perl

:: DOWNLOAD

 AFLPinSilico

:: MORE INFORMATION

Citation

Bioinformatics. 2003 Apr 12;19(6):776-7.
AFLPinSilico, simulating AFLP fingerprints.
Rombauts S, Van De Peer Y, Rouzé P.

AFLPsurv 1.0 – Genetic Diversity Analysis with AFLP (and RAPD) Population data

AFLPsurv 1.0

:: DESCRIPTION

AFLP-SURV estimates genetic diversity and population genetic structure from population samples analysed with AFLP or RAPD methods and computes geneitc distance matrices between populations. The program starts by estimating allelic frequencies at each marker locus in each population assuming they are dominant and have only two alleles (a dominant marker allele coding for the presence of a band at a given position and a recessive null allele coding for the absence of the band).

::DEVELOPER

Xavier Vekemans @ Evolutionary Biology & Ecology, Université Libre de Bruxelles

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 AFLPsurv

:: MORE INFORMATION