NetStart 1.0c – Translation Start in Vertebrate & A. Thaliana DNA

NetStart 1.0c

:: DESCRIPTION

NetStart produces neural network predictions of translation start in vertebrate and Arabidopsis thaliana nucleotide sequences. NetStart has been trained on cDNA-like sequences and will therefore presumably have better performance for cDNAs and ESTs. We have not tested the performance on genome data which may contain introns adjacent to the start codon.

::DEVELOPER

CBS (Center for Biological Sequence Analysis),  Technical University of Denmark

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NetStart

:: MORE INFORMATION

Citation

Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis.
A. G. Pedersen and H. Nielsen, ISMB: 5, 226-233, 1997.

NetGene2 2.42 – Intron Splice Sites in Human, C. Elegans & A. Thaliana DNA

NetGene2 2.42

:: DESCRIPTION

NetGene2 is a service producing neural network predictions of splice sites in human, C. elegans and A. thaliana DNA.

::DEVELOPER

CBS (Center for Biological Sequence Analysis),  Technical University of Denmark

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NetGene2 Source Code

:: MORE INFORMATION

Citation

S.M. Hebsgaard, P.G. Korning, N. Tolstrup, J. Engelbrecht, P. Rouze, S. Brunak
Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information
Nucleic Acids Research, 1996, Vol. 24, No. 17, 3439-3452.

Brunak, S., Engelbrecht, J., and Knudsen, S.
Prediction of Human mRNA Donor and Acceptor Sites from the DNA Sequence
Journal of Molecular Biology, 1991, 220, 49-65.