Basic4Cseq 1.6.0 – an R/Bioconductor package for analyzing 4C-seq data

Basic4Cseq 1.6.0

:: DESCRIPTION

Basic4Cseq is an R/Bioconductor package for basic filtering, analysis and subsequent visualization of 4C-seq data. Virtual fragment libraries can be created for any BSGenome package, and filter functions for both reads and fragments and basic quality controls are included.

::DEVELOPER

Carolin Walter <carolin.walter at uni-muenster.de>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/ MacOsX
  • R
  • BioCOnductor

:: DOWNLOAD

 Basic4Cseq

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Jul 30. pii: btu497. [Epub ahead of print]
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data.
Walter C, Schuetzmann D, Rosenbauer F, Dugas M.

fourSig 2.2 – Analyze 4C-seq data

fourSig 2.2

:: DESCRIPTION

fourSig is a suite of programs for analyzing and visualizing 4C-seq data.

::DEVELOPER

fourSig team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Linux/ MacOsX
  • Perl
  • R

:: DOWNLOAD

 fourSig

:: MORE INFORMATION

Citation

fourSig: a method for determining chromosomal interactions in 4C-Seq data.
Williams RL Jr, Starmer J, Mugford JW, Calabrese JM, Mieczkowski P, Yee D, Magnuson T.
Nucleic Acids Res. 2014 Apr;42(8):e68. doi: 10.1093/nar/gku156.