1D – Protein Structure Prediction Server

1D

:: DESCRIPTION

1D server (integrated server for prediction of fold, structural class and secondary structure content).

::DEVELOPER

Kurgan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows
  • Java JRE

:: DOWNLOAD

 1D

:: MORE INFORMATION

Citation

Fold Type Prediction
Chen K, Kurgan LA, 2007.
PFRES: Protein Fold Classification by Using Evolutionary Information and Predicted Secondary Structure.
Bioinformatics, 23(21):2843-2850.

Structural Class Prediction
Chen K, Kurgan LA, Ruan J, 2008.
Prediction of Protein Structural Class Using Novel Evolutionary Collocation Based Sequence Representation.
Journal of Computational Chemistry, 29(10):1596-1604.

Secondary Structure Content Prediction
Homaeian L, Kurgan LA, Cios KJ, Ruan J, Chen K, 2007.
Prediction of Protein Secondary Structure Content for the Twilight Zone Sequences.
Proteins: Structure, Function, and Bioinformatics, 69(3):486-498.

CLIPS-1D / CLIPS-4D – Predicting Functionally and Structurally Important Residue-positions based on 1D / and 3D data

CLIPS-1D / CLIPS-4D

:: DESCRIPTION

CLIPS-1D / CLIPS-4D: Predicting functionally and structurally importand residues by means of a multiclass support vector machine

::DEVELOPER

Computational Protein Design and Evolution at the University of Regensburg

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Apr 5;13:55. doi: 10.1186/1471-2105-13-55.
CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure.
Janda JO, Busch M, Kück F, Porfenenko M, Merkl R.

Bioinformatics. 2013 Oct 4.
CLIPS-4D: a classifier that distinguishes structurally and functionally important residue-positions based on sequence and 3D data.
Janda JO, Meier A, Merkl R.

Gel Analyzer 2010a – 1D Gel Electrophoresis Image Analysis

Gel Analyzer 2010a

:: DESCRIPTION

GelAnalyzer is a free 1D gel electrophoresis image analysis software .The process of gel image analysis is straightforward and covers all the main aspects of evaluation from automatic lane detection to precise molecular weight calculations. Many tools help you to improve the accuracy of gel evaluation, such as background subtraction methods and Rf calibration. These features make GelAnalyzer a real solution to gel image analysis in cost sensitive enviroments. With GelAnalyzer you don’t need expensive gel documentation system for simple image evaluation. You may obtain the gel image with a common digital camera, or even with your cell phone, and use GelAnalyzer to get the results in just a few seconds.

::DEVELOPER

lazarsoftware.com

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Mac OsX / Windows
  • Java

:: DOWNLOAD

Gel Analyzer

:: MORE INFORMATION

By downloading, copying or installing any version of GelAnalyzer you accept to be bound by the End User Licence Agreement.

Phoretix 1D / Phoretix 1D Pro – 1D Gel Analysis

Phoretix 1D / Phoretix 1D Pro

:: DESCRIPTION

Phoretix 1D is the premium 1D Gel analysis product on the market.As well as all of the automated features available in the 1D Gel analysis module of TotalLab Quant it can also perform complex band pattern matching across a gel essential in sample strain analysis, such as cultivar experiments, evolutionary biology and population genetics.

Phoretix 1D Pro allows you to perform large dataset investigations in a fast and easy to use interface. It includes Phoretix 1D analysis software together with a robust database to create a powerful analysis platform.

::DEVELOPER

TotalLab Limited

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Phoretix 1D / Phoretix 1D Pro

:: MORE INFORMATION

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