T-Analyst is a program for analyzing molecular dynamics trajectories based on internal bond-angle-torsion coordinates. The program computes entropy and rotameric states of dihedrals, clusters multiple conformations and detects dihedral rotations that contribute hinge-like motions. T-Analyst was developed with special focuses on showing changes of protein flexibility between different states, and selecting representative protein conformations for molecular docking studies.
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T-Analyst: a program for efficient analysis of protein conformational changes by torsion angles.
Rizi Ai, M. Qaiser Fatmi and Chia-en Chang,
Journal of Computer-Aided Molecular Design, 2010, 24 (10), 819-827.