Apr 012011
 

SWIFT 1.0.1 / BALSAM 1.3

:: DESCRIPTION

SWIFT suit is a software collection for fast index-based sequence comparison. It contains the following programs:

  • SWIFT — fast local alignment search, guaranteeing to find epsilon-matches between two sequences.
  • SWIFT BALSAM (BAsic fiLter for Semigobal non-gapped AlignMent search) — a very fast program to find semiglobal non-gapped alignments based on k-mer seeds.

::DEVELOPER

Wolfgang Gerlach ; Rasmussen KR, Stoye J, Myers EW.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / SUN solaris

:: DOWNLOAD

SWIFT ; BALSAM

:: MORE INFORMATION

Citation

K. Rasmussen, J. Stoye, E. W. Myers

Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length
In J. Comp. Biol. 13(2), 296-308, 2006.

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