SWIFT 1.0.1 / BALSAM 1.3
SWIFT suit is a software collection for fast index-based sequence comparison. It contains the following programs:
- SWIFT — fast local alignment search, guaranteeing to find epsilon-matches between two sequences.
- SWIFT BALSAM (BAsic fiLter for Semigobal non-gapped AlignMent search) — a very fast program to find semiglobal non-gapped alignments based on k-mer seeds.
Wolfgang Gerlach ; Rasmussen KR, Stoye J, Myers EW.
- Linux / SUN solaris
:: MORE INFORMATION
K. Rasmussen, J. Stoye, E. W. Myers
Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length
In J. Comp. Biol. 13(2), 296-308, 2006.