SWAPHI is the first parallel algorithm to accelerate the Smith-Waterman protein database search on Intel Xeon Phi coprocessors (with affine gap penalty).
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Yongchao Liu and Bertil Schmidt:
“SWAPHI: Smith-Waterman protein database search on Xeon Phi coprocessors”.
25th IEEE International Conference on Application-specific Systems, Architectures and Processors (ASAP 2014), 2014, accepted