SVMcon predicts medium- to long-range residue-residue contacts using Support Vector Machines. The contact predictions are in the CASP format (residue index 1, residue index 2, 0, 8, contact probability). The contact distance threshold is 8 angstrom. The sequence separation between two residues is at least 6 residues.
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BMC Bioinformatics. 2007 Apr 2;8:113.
Improved residue contact prediction using support vector machines and a large feature set.
Cheng J, Baldi P.