SVAMP is standalone desktop application to visualise variants (SNPs and indels) and peform realtime analysis on selected regions of a genome on specific samples. SVAMP has some interesting features like phylogeography,allele frequency map and principal coordinate analysis.
Computational Bioscience Research Center, King Abdullah University of Science and Technology
- Linux / MacOsX
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Bioinformatics. 2014 Apr 23. [Epub ahead of print]
SVAMP: sequence variation analysis, maps and phylogeny.
Naeem R1, Hidayah L, Preston MD, Clark TG, Pain A.