SurreyFBA provides constraint-based simulations and network map visualization. In addition to basic simulation protocols, the tool also implements the analysis of minimal substrate and product sets, which is useful for metabolic engineering and prediction of nutritional requirements in complex in vivo environments, but not available in other commonly used programs.
Division of Microbial Sciences, University of Surrey
- Linux/MacOsX / Windows
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Bioinformatics. 2011 Feb 1;27(3):433-4. doi: 10.1093/bioinformatics/btq679. Epub 2010 Dec 9.
SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks.
Gevorgyan A, Bushell ME, Avignone-Rossa C, Kierzek AM.