Jan 182016
 

StriDe

:: DESCRIPTION

The StriDe Assembler integrates string and de Bruijn graph by decomposing reads within error-prone regions, while extending paire-end read into long reads for assembly through repetitive regions.

::DEVELOPER

Huang YT ythuang@cs.ccu.edu.tw.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

StriDe

:: MORE INFORMATION

Citation

Integration of String and de Bruijn Graphs for Genome Assembly.
Huang YT, Liao CF.
Bioinformatics. 2016 Jan 10. pii: btw011.

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