STAP – Sequence To Affinity Prediction

STAP

:: DESCRIPTION

STAP (Sequence To Affinity Prediction) predict transcription factor and DNA interaction affinity and the DNA sequence, considering combinatorial interactions of multiple transcription factors. STAP can be applied to analyze ChIP-seq data.

::DEVELOPER

Zhong Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • GNU Scientific Library (GSL).

:: DOWNLOAD

  STAP

:: MORE INFORMATION

Citation

PLoS One. 2009 Dec 1;4(12):e8155.
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.
He X, Chen CC, Hong F, Fang F, Sinha S, Ng HH, Zhong S.

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