SSHscreen is the R software package for screening forward and reverse cDNA libraries enriched for cowpea drought response genes microarrays, (i) to normalize the data effectively using spike-in control spot normalization, and (ii) to select clones for sequencing based on the calculation of enrichment ratios with associated statistics.
the Bioinformatics and Computational Biology Unit at the University of Pretoria
- R package
:: MORE INFORMATION
Coetzer N, Gazendam I, Oelofse D, Berger DK (2010)
SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea.
Plant Methods 6: 10.