SSEA (SNP Set Enrichment Analysis) is a new SNP-based pathway analysis software for GWAS studies. SSEA consists of two main steps: selecting representative SNPs for each gene, and performing pathway enrichment analysis using all selected SNPs.
CBCL Lab (Computational Biology and Computational Learning) @ UCI
- Linux / Windows / MacOsX
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Lingjie Weng, Fabio Macciardi, Aravind Subramanian, Guia Guffanti, Steven G. Potkin, Zhaoxia Yu, Xiaohui Xie
“SNP-based Pathway Enrichment Analysis for Genome-wide Association Study“;
BMC Bioinformatics 2011, 12:99