SSCprofiler – miRNA Gene Prediction

SSCprofiler

:: DESCRIPTION

SSCprofiler (Sequence, Structure and Conservation) is a new computational tool utilizing a probabilistic method based on Profile Hidden Markov Models to predict novel miRNA precursors.

::DEVELOPER

Ioannis Iliopoulos’ Bioinformatics & Computational Biology Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web¬†Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2009 Jun;37(10):3276-87. doi: 10.1093/nar/gkp120. Epub 2009 Mar 25.
Prediction of novel microRNA genes in cancer-associated genomic regions–a combined computational and experimental approach.
Oulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, Poirazi P.