Apr 202016
 

SRST 2-0.1.8

:: DESCRIPTION

SRST is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

::DEVELOPER

SRST team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • Python
  • bowtie2
  • SAMtools

:: DOWNLOAD

 SRST

:: MORE INFORMATION

Citation

Genome Med. 2014 Nov 20;6(11):90. doi: 10.1186/s13073-014-0090-6. eCollection 2014.
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.
Inouye M, Dashnow H, Raven LA, Schultz MB, Pope BJ, Tomita T, Zobel J, Holt KE

BMC Genomics. 2012 Jul 24;13:338.
Short read sequence typing (SRST): multi-locus sequence types from short reads.
Inouye M, Conway TC, Zobel J, Holt KE.

106 views

Sorry, the comment form is closed at this time.