Oct 312013
 

SRCP 1.0

:: DESCRIPTION

The SRCP is a high-throughput, automated data analysis pipeline that is used to classify genomic shotgun reads into functional/descriptive sequence categories. It represents a powerful means of rapidly describing the sequence content of a genome and a standardized method for estimating gene/repeat enrichment or reduction afforded by Cot filtration, CBCS, and/or other reduced-representation sequencing (RRS) techniques

:: DEVELOPER

the Mississippi Genomics Exploration Laboratory (MGEL) ,Mississippi State University,

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Perl

:: DOWNLOAD

 SRCP

:: MORE INFORMATION

Citation

Anal Biochem. 2008 Feb 1;373(1):78-87.
An automated, high-throughput sequence read classification pipeline for preliminary genome characterization.
Chouvarine P, Saha S, Peterson DG.

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