The SRCP is a high-throughput, automated data analysis pipeline that is used to classify genomic shotgun reads into functional/descriptive sequence categories. It represents a powerful means of rapidly describing the sequence content of a genome and a standardized method for estimating gene/repeat enrichment or reduction afforded by Cot filtration, CBCS, and/or other reduced-representation sequencing (RRS) techniques
the Mississippi Genomics Exploration Laboratory (MGEL) ,Mississippi State University,
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Anal Biochem. 2008 Feb 1;373(1):78-87.
An automated, high-throughput sequence read classification pipeline for preliminary genome characterization.
Chouvarine P, Saha S, Peterson DG.