SRAdb 1.22.0 – R tool to Query/ Download Short Read Archive

SRAdb 1.22.0

:: DESCRIPTION

SRAdb is an attempt to make queries of the metadata associated with SRA (Sequence Read Archive ) submission, study, sample, experiment and run more robust and precise, and make access to sequencing data in the SRA easier

::DEVELOPER

Jack Zhu <zhujack@mail.nih.gov>, Sean Davis @NCI

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • R package
  • BioConductor

:: DOWNLOAD

 SRAdb

:: MORE INFORMATION

Citation
BMC Bioinformatics. 2013 Jan 17;14:19. doi: 10.1186/1471-2105-14-19.
SRAdb: query and use public next-generation sequencing data from within R.
Zhu Y, Stephens RM, Meltzer PS, Davis SR.