Sprites is a sv caller that specializes in detecting deletion from low-coverage sequencing data. It works by identifying split reads from alignments based on soft-clipping information.
Zhen Zhang (firstname.lastname@example.org)
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Sprites: detection of deletions from sequencing data by re-aligning split reads.
Zhang Z, Wang J, Luo J, Ding X, Zhong J, Wang J, Wu FX, Pan Y.
Bioinformatics. 2016 Feb 1. pii: btw053.