SPP is an R package by Peter Kharchenko implements tools for analysis of sequencing data from chromatin immunoprecipitation experiments. It includes normalization of the binding profile, detection of enriched regions, and an estimate of read depth needed to achieve saturation of binding sites.
- Linux / WIndows /MacOsX
- R package
:: MORE INFORMATION
Kharchenko PK, Tolstorukov MY, Park PJ
“Design and analysis of ChIP-seq experiments for DNA-binding proteins”
Nat. Biotech. doi:10.1038/nbt.1508