Nov 032015
 

SplitMEM 1.0

:: DESCRIPTION

splitMEM is  an algorithm that directly constructs the compressed de Bruijn graph in time and space linear to the total number of genomes for a given maximum genome size.

::DEVELOPER

Schatz Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SplitMEM

:: MORE INFORMATION

Citation

SplitMEM: A graphical algorithm for pan-genome analysis with suffix skips.
Marcus S, Lee H, Schatz MC.
Bioinformatics. 2014 Nov 13. pii: btu756.

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