Splign is a utility for computing cDNA-to-Genomic, or spliced sequence alignments. At the heart of the program is a compartmentization algorithm which identifies possible gene duplications, and a refined alignment algorithm recognizing introns and splice signals.
- Linux / Windows / Mac OsX
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Y.Kapustin, A.Souvorov, T.Tatusova and D.Lipman.
Splign: algorithms for computing spliced alignments with identification of paralogs.
Biology Direct, May 2008.