SpliceGrapher is a tool for predicting splice graphs and alternative splicing patterns using next generation sequencing data, guided by gene models and EST data.
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Genome Biol. 2012 Jan 31;13(1):R4. [Epub ahead of print]
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data.
Rogers MF, Thomas J, Reddy AS, Ben-Hur A.