SPLASH (structural pattern localization analysis by sequential histograms) is a deterministic pattern discovery algorithm which can find sparse amino or nucleic acid patterns matching identically or similarly in a set of protein or DNA sequences. Sparse patterns of any length, up to the size of the input sequence can be discovered without significant loss in performance. Splash is extremely efficient and embarrassingly parallel by nature
- Linux/ Windows with Cygwin
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SPLASH: structural pattern localization analysis by sequential histograms
Bioinformatics (2000) 16 (4): 341-357.