Sep 242015
 

specL 1.2.0

:: DESCRIPTION

specL provides a function for generating spectra libraries which can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software.

::DEVELOPER

Christian Trachsel <christian.trachsel at fgcz.uzh.ch>, Christian Panse <cp at fgcz.ethz.ch>, Jonas Grossmann <jg at fgcz.ethz.ch>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux /MacOsX
  • R/Bioconductor

:: DOWNLOAD

 specL

:: MORE INFORMATION

Citation:

specL – An R/Bioconductor package to prepare peptide spectrum matches for use in targeted proteomics.
Panse C, Trachsel C, Grossmann J, Schlapbach R.
Bioinformatics. 2015 Feb 23. pii: btv105.

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