SPatt is a suite of C++ programs designed for the computation of pattern occurrences p-value on text. Assuming the text is generated according to Markov model, the p-value of a given observation is its probability to occur. The lower is the p-value, the more unlikely is the observation. For example, this tools can be used to find patterns with unusual behaviour in DNA or proteins sequences.
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G. Nuel (2011).
Significance Score of Motifs in Biological Sequences.
Bioinformatics – Trends and Methodologies, Mahmood A. Mahdavi (Ed.) | www | ISBN: 978-953-307-282-1, InTech.