Spanki 0.5.0 – Analysis of Alternative Splicing from RNA-Seq data

Spanki 0.5.0

:: DESCRIPTION

Spanki (Splicing Analysis Kit) is a set of tools to facilitate analysis of alternative splicing from RNA-Seq data. Spanki compiles quantitative and qualitative information about junction alignments from input BAM files, and analyzes junction-level splicing along with pairwise-defined splicing events. A simulator is also included to evaluate junction detection performance.

::DEVELOPER

The University of Maryland Center for Bioinformatics and Computational Biology (CBCB)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • ¬†Linux
  • Python
  • BioPython

:: DOWNLOAD

 Spanki

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2013 Nov 9;14:320. doi: 10.1186/1471-2105-14-320.
Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).
Sturgill D1, Malone JH, Sun X, Smith HE, Rabinow L, Samson ML, Oliver B.