Oct 122015
 

SPalign / SPalign-NS

:: DESCRIPTION

SPalign is a program that optimizes SP-score for structure alignment. SPalign was applied to recognize proteins within the same structure fold and having the same function of DNA or RNA binding.

SPalign-NS: Non-sequential Protein Structure Alignment

::DEVELOPER

Laboratory of Structural Bioinformatics and Design

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SPalign , SPalign-NS

:: MORE INFORMATION

Citation

Fast and accurate non-sequential protein structure alignment using a new asymmetric linear sum assignment heuristic.
Brown P, Pullan W, Yang Y, Zhou Y.
Bioinformatics. 2015 Oct 10. pii: btv580.

Proteins. 2012 Aug;80(8):2080-8. doi: 10.1002/prot.24100. Epub 2012 May 25.
A new size-independent score for pairwise protein structure alignment and its application to structure classification and nucleic-acid binding prediction.
Yang Y1, Zhan J, Zhao H, Zhou Y.

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