May 082014
 

SPADE 1.10.2 / CytoSPADE 2.2

:: DESCRIPTION

SPADE is a visualization and analysis tool for high-dimensional flow cytometry data. SPADE is implemented as an R package and can be installed via R’s packaging facilities.

CytoSPADE is an implementation of the Spanning-tree Progression of Density-normalized Events (SPADE) algorithm for visualizing high-dimensional flow cytometry data.

::DEVELOPER

Garry P. Nolan LaboratoryStanford University / Peng Qiu

:: SCREENSHOTS

SPADE1

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • R package / Java , Cytoscape

:: DOWNLOAD

 SPADE / CytoSPADE

:: MORE INFORMATION

Citation

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE
Peng Qiu, Erin F Simonds, Sean C Bendall, Kenneth D Gibbs Jr, Robert V Bruggner, Michael D Linderman, Karen Sachs, Garry P Nolan & Sylvia K Plevritis
Nature Biotechnology 29, 886–891 (2011)

Linderman MD, Bjornson Z, Simonds EF, Qiu P, Bruggner R, Sheode K, Meng TH, Plevritis SK, Nolan GP.
CytoSPADE: High-Performance Analysis and Visualization of High-Dimensional Cytometry Data.
Bioinformatics. 2012 Sep 15;28(18):2400-1. doi: 10.1093/bioinformatics/bts425

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