Oct 142015
 

SOrt-ITEMS

:: DESCRIPTION

SOrt-ITEMS is a similarity based binning method. User needs to perform a similarity search of the input metagenomic sequences (reads) against the nr database using BLAST. The generated blastx output (corresponding to the metagenomic reads) is then taken as the input by SOrt-ITEMS program.

::DEVELOPER

Bio-Sciences R&D Division, TCS Innovation Labs

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 SOrt-ITEMS

:: MORE INFORMATION

Citation

SOrt-ITEMS : Sequence Orthology based approach for binning and Improved Taxonomic Estimation of Metagenomic Sequences.
Monzoorul Haque M, Tarini Shankar Ghosh, Dinakar Komanduri, and Sharmila S Mande.
Bioinformatics 2009 25(14):1722-1730; doi:10.1093/bioinformatics/btp317

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