SNV-PPILP 1.2 – Refined SNV calling for Tumor data using perfect Phylogenies and ILP

SNV-PPILP 1.2

:: DESCRIPTION

SNV-PPILP is a fast and easy to use tool for refining GATK’s Unified Genotyper SNV calls, for multiple samples assumed to form a phylogeny.

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::DEVELOPER

GSA (Genome-scale algorithmics) group

 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /Windows/ MacOsX
  • Python

:: DOWNLOAD

 SNV-PPILP

:: MORE INFORMATION

Citation:

SNV-PPILP: Refined SNV calling for tumor data using perfect phylogenies and ILP.
van Rens KE, Mäkinen V, Tomescu AI.
Bioinformatics. 2014 Nov 13. pii: btu755