SNPTEST is a program for the analysis of single SNP association in genome-wide studies. The tests implemented include
Binary (case-control) phenotypes, single and multiple quantitative phenotypes
Bayesian and Frequentist tests
Ability to condition upon an arbitrary set of covariates and/or SNPs.
Various different methods for the dealing with imputed SNPs.
- Windows /MacOsX / Linux
:: MORE INFORMATION
J. Marchini and B. Howie (2010)
Genotype imputation for genome-wide association studies.
Nature Reviews Genetics