SNPSVM is a support vector machine based method for identifying sequence variants in next-gen sequencing data. It takes as input a BAM-formatted alignment of sequencing reads, and emits a VCF formatted file describing where all the SNPs (single nucleotide polymorphisms) are.
Brendan O’Fallon , firstname.lastname@example.org
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Bioinformatics. 2013 Jun 1;29(11):1361-6. doi: 10.1093/bioinformatics/btt172. Epub 2013 Apr 24.
A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data.
O’Fallon BD, Wooderchak-Donahue W, Crockett DK.