SNPdat (SNP Data Analysis Tool) is a high throughput analysis tool that can provide a comprehensive annotation of both novel and known single nucleotide polymorphisms (SNPs). It is specifically designed for use with organisms which are either not supported by other tools or have a small number of annotated SNPs available, however it can also be used to analyse datasets from organisms which are densely sampled for SNPs. It can be used for analysis of any organism with a draft sequence and annotation. SNPdat makes possible analyses involving non-model organisms that are not supported by the vast majority of SNP annotation tools currently available.
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BMC Bioinformatics, 14, 45 2013 Feb 8
Snpdat: Easy and Rapid Annotation of Results From De Novo Snp Discovery Projects for Model and Non-Model Organisms
Anthony G Doran , Christopher J Creevey