SNPassoc contains classes and methods to help the analysis of whole genome association studies. SNPassoc utilizes S4 classes and extends haplo.stats R package to facilitate haplotype analyses. The package is useful to carry out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis).
- Linux / Windows / MacOsX
- R Package
:: MORE INFORMATION
Bioinformatics. 2007 Mar 1;23(5):644-5. Epub 2007 Jan 31.
SNPassoc: an R package to perform whole genome association studies.
González JR, Armengol L, Solé X, Guinó E, Mercader JM, Estivill X, Moreno V.