SNPAlyze is able to import many specific types of Genotyping data files and analyze them.When case-control studies are analyzed, in addition to the columns with genotyping data, extra columns for cases and controls are necessary in order to distinguish the groups.
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Shimo-Onoda, Tanaka, Furushima, Nakajima, Toh, Harata, Yone, Komiya, Adachi, Nakamura, Fujimiya, Inoue(2002),
“Akaike’s information criterion for a measure of linkage disequilibrium“,
J Hum Genet, 47(12): 649-655