SNAP calculates synonymous and non-synonymous substitution rates based on a set of codon-aligned nucleotide sequences. It outputs a synonymous and a non-synonymous distance matrix, an exhaustive pairwise codon-by-codon comparison, and a summary table.
- Linux/ MacOsX/Windows
:: MORE INFORMATION
Korber B. (2000)
HIV Signature and Sequence Variation Analysis.
Computational Analysis of HIV Molecular Sequences, Chapter 4, pages 55-72.
Allen G. Rodrigo and Gerald H. Learn, eds. Dordrecht, Netherlands: Kluwer Academic Publishers.