Jan 182016
 

SMURFLite

:: DESCRIPTION

SMURF is a webserver for protein structural motifs dection using random fields

SMURFLite (simplified Structural Motifs Using Random Fields)  is a web application for protein remote homology detection, specifically in beta-structural proteins.

::DEVELOPER

Berger Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

M. Menke, B. Berger and L. Cowen,
Markov random fields reveal an N-terminal double beta-propeller motif as part of a bacterial hybrid two-component sensor system
PNAS March 2, 2010 vol. 107 no. 9 4069-4074.

Bioinformatics. 2012 May 1;28(9):1216-22. doi: 10.1093/bioinformatics/bts110.
SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone.
Daniels NM, Hosur R, Berger B, Cowen LJ.

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