Dec 072012
 

sMotif / exMotif

:: DESCRIPTION

sMotif and exMotif are two complementary for searching and extracting/mining structured sequence motifs DNA sequences. A structured motif consists of simple motifs separated by different gap lengths. The simple motif may be a simple pattern or a position weighted matrix or profile. Given a template structured motif (pattern or profile), sMotif finds all matches in a given set of sequences. On the other hand, exMotif mines novel motifs matching some minimal conditions on the gaps and frequency.

::DEVELOPER

Mohammed J. Zaki

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 sMotif / exMotif

:: MORE INFORMATION

Citation

Yongqiang Zhang and Mohammed J. Zaki,
EXMOTIF: efficient structured motif extraction.
Algorithms for molecular biology, 1(21). Nov 2006.

Yongqiang Zhang and Mohammed J. Zaki,
SMOTIF: efficient structured pattern and profile motif search.
Algorithms for molecular biology, 1(22). Nov 2006.

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