May 292013
 

SLiQ

:: DESCRIPTION

SLIQ , a set of simple linear inequalities derived from the geometry of contigs on the line, can be used to predict the relative positions and orientations of contigs from individual mate pair reads and thus produce a contig digraph.

::DEVELOPER

Schliep lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Mac OsX / Windows
  • Python

:: DOWNLOAD

 SLiQ 

:: MORE INFORMATION

Citation

SLIQ: simple linear inequalities for efficient contig scaffolding.
Roy RS, Chen KC, Sengupta AM, Schliep A.
J Comput Biol. 2012 Oct;19(10):1162-75.

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