Sep 202015
 

SLiMSuite 20150107

:: DESCRIPTION

The SLiMSuite collection contains a number of open-source bioinformatics tools to analyse these important protein features. The main programs in SLiMSuite are: SLiMFinder, SLiMSearch, QSLiMFinder, SLiMDisc, SLiMPred, SLiMPrints, CompariMotif, SLiMMaker, PRESTO and GOPHER.

::DEVELOPER

Dr Richard J. Edwards

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Python

:: DOWNLOAD

 SLiMSuite

:: MORE INFORMATION

Citation:

Bioinformatics. 2015 Mar 19. pii: btv155.
QSLiMFinder: improved short linear motif prediction using specific query protein data.
Palopoli N, Lythgow KT, Edwards RJ

Davey NE, Cowan JL, Shields DC, Gibson TJ, Coldwell MJ, Edwards RJ
SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions.
Nucl. Acids Res. (2012)doi: 10.1093/nar/gks854

Davey NE, Haslam NJ, Shields DC & Edwards RJ (2011):
SLiMSearch 2.0: biological context for short linear motifs in proteins.
Nucleic Acids Research 39: W56-W60

Davey NE, Haslam NJ, Shields DC & Edwards RJ (2010):
SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.
Nucleic Acids Research 38: W534-W539.

Davey NE*, Edwards RJ* & Shields DC (2007):
The SLiMDisc server: short, linear motif discovery in proteins.
Nucleic Acids Res. 35(Web Server issue):W455-9.

Edwards RJ, Davey NE & Shields DC (2008):
CompariMotif: Quick and easy comparisons of sequence motifs.
Bioinformatics 24(10):1307-9

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