SITES is a computer program for the analysis of comparative DNA sequence data. Basic analyses include: data summaries by polymorphism class; polymorphism estimates within and between groups (species); estimates of migration, neutral model, and recombination parameters; and linkage disequilibrium analyses. SITES is primarily intended for data sets with multiple closely related sequences. It is especially useful when multiple sequences have been obtained from each of one or several closely related populations or species.
- Windows / Linux / MacOsX
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Hey, J and J. Wakeley. 1997.
A coalescent estimator of the population recombination rate.
GENETICS 145: 833-846.