SISSRs 1.4 – Genome-wide Identification of in vivo Protein-DNA Interactions from ChIP-Seq data

SISSRs 1.4

:: DESCRIPTION

SISSRs (Site Identification from Short Sequence Reads) is a software application for precise identification of genome-wide transcription factor binding sites from ChIP-Seq data. I The sensitivity and specificity of SISSRs are demonstrated by applying it on ChIP-Seq data for three widely studied and well-characterized human transcription factors: CTCF, NRSF, and STAT1.

::DEVELOPER

Raja Jothi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • perl 

:: DOWNLOAD

 SISSRs 

:: MORE INFORMATION

Citation

Jothi R, Cuddapah S, Barski A, Cui K, Zhao K.
Genome-wide identification of in vivo protein–DNA binding sites from ChIP-Seq data.
Nucleic Acids Research (2008) 36(16):5221-31

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