SISSRs (Site Identification from Short Sequence Reads) is a software application for precise identification of genome-wide transcription factor binding sites from ChIP-Seq data. I The sensitivity and specificity of SISSRs are demonstrated by applying it on ChIP-Seq data for three widely studied and well-characterized human transcription factors: CTCF, NRSF, and STAT1.
- Linux / Windows / MacOsX
:: MORE INFORMATION
Jothi R, Cuddapah S, Barski A, Cui K, Zhao K.
Genome-wide identification of in vivo protein–DNA binding sites from ChIP-Seq data.
Nucleic Acids Research (2008) 36(16):5221-31